GLAM2: Gapped Local Alignment of Motifs

Version 1056
/home/install/usr/apps/meme_4.1.0/bin/glam2 -Q -O . -M -A 'fred@gmail.com' -X '' -z 2 -a 2 -b 50 -w 20 -r 10 -n 10000 -D 0.1 -E 2 -I 0.02 -J 1 p sequences

If you use this program in your research, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey, "Discovering sequence motifs with arbitrary insertions and deletions", PLoS Computational Biology, 4(5):e1000071, 2008.

Best Motif Found:

NAME START SITES END STRAND MARGINAL SCORE
CD3G_HUMAN_1 11 D Q L Y Q P L K . . . . . D R E D D Q Y S H L 28 + 19.0
CD3Z_HUMAN_1 11 E G L Y N E L Q K . . . . D K M A E A Y S E I 29 + 17.7
CD3Z_HUMAN_1 7 D G L Y Q G L S . . . . . T A T K D T Y D A L 24 + 21.0
CD79A_HUMAN_ 11 E N L Y E G L N L . . . . D D C S . M Y E D I 28 + 22.3
CD79B_HUMAN_ 11 D H T Y E G L D I . . . . D Q T A . T Y E D I 28 + 22.1
FCG2A_HUMAN_ 11 D G G Y M T L N P R A P T D D D K N I Y L T L 33 + 6.73
Score: 62.2155
logo with ssc
against sequence databases using GLAM2SCAN.

Replicates:

Check that at least some of these are similar to the best motif found.
If not, there may well be an even better motif: with more iterations to find it.

Score: 62.2155
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 62.0590
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 62.0590
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 61.6880
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 61.6880
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 61.6880
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 61.6880
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 61.6880
logo with ssc
against sequence databases using GLAM2SCAN.
Score: 61.6880
logo with ssc
against sequence databases using GLAM2SCAN.